Browsing Mathematical Modelling with Multidisciplinary Applications (M3A) by Title
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Enhancing Sampling in Computational Statistics Using Modified Hamiltonians
(20161115)The Hamiltonian Monte Carlo (HMC) method has been recognized as a powerful sampling tool in computational statistics. In this thesis, we show that performance of HMC can be dramatically improved by replacing Hamiltonians ... 
Estimation of agespecific rates of reactivation and immune boosting of the varicella zoster virus
(20161231)Studies into the impact of vaccination against the varicella zoster virus (VZV) have increasingly focused on herpes zoster (HZ), which is believed to be increasing in vaccinated populations with decreasing infection pressure. ... 
Ethics of a partially effective dengue vaccine: Lessons from the Philippines
(202007)Dengvaxia, a chimeric yellow fever tetravalent dengue vaccine developed by SanofiPasteur is widely licensed in dengueendemic countries. In a large cohort study Dengvaxia was found to partially protect children who had ... 
An even simpler understanding of quantum weak values
(201801)We explain the properties and clarify the meaning of quantum weak values using only the basic notions of elementary quantum mechanics. 
Excitation of plasmons in a twodimensional electron gas with defects by microwaves: Wakefield method
(20111231)We develop an analytical method to find plasmons generated by microwaves in a twodimensional electron gas with defects. The excitations are expressed in terms of the wake field of a charged particle moving in plasma. The ... 
The Experiment Data Depot: A WebBased Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
(20170930)Although recent advances in synthetic biology allow us to produce biological designs more efficiently than ever, our ability to predict the end result of these designs is still nascent. Predictive models require large ... 
Exploring Liion conductivity in cubic, tetragonal and mixedphase Alsubstituted Li7La3Zr2O12 using atomistic simulations and effective medium theory
(20190815)Garnet Li7La3Zr2O12 (LLZO) is a promising solid electrolyte candidate for solidstate Liion batteries, but at room temperature it crystallizes in a poorly Liion conductive tetragonal phase. To this end, partial substitution ... 
Extracting Smatrix poles for resonances from numerical scattering data: TypeII Padé reconstruction
(20111231)We present a FORTRAN 77 code for evaluation of resonance pole positions and residues of a numerical scattering matrix element in the complex energy (CE) as well as in the complex angular momentum (CAM) planes. Analytical ... 
Extreme brain events: Higherorder statistics of brain resting activity and its relation with structural connectivity
(20151231)The brain exhibits a wide variety of spatiotemporal patterns of neuronal activity recorded using functional magnetic resonance imaging as the socalled bloodoxygenatedleveldependent (BOLD) signal. An active area of work ... 
FluxEnabled Exploration of the Role of Sip1 in Galactose Yeast Metabolism
(20170531)13C metabolic flux analysis (13C MFA) is an important systems biology technique that has been used to investigate microbial metabolism for decades. The heterotrimer Snf1 kinase complex plays a key role in the preference ... 
From chemical gardens to chemobrionics
(20151231)Chemical gardens in laboratory chemistries ranging from silicates to polyoxometalates, in applications ranging from corrosion products to the hydration of Portland cement, and in natural settings ranging from hydrothermal ... 
Functional connectivity of EEG signals under laser stimulation in migraine
(20151231)In previous studies, migraine patients showed abnormalities in painrelated evoked responses, as reduced habituation to repetitive stimulation. In this study, we aimed to apply a novel analysis of EEG bands synchronization ... 
Functional Geometry of Human Connectomes
(201908)Mapping the brain imaging data to networks, where nodes represent anatomical brain regions and edges indicate the occurrence of fiber tracts between them, has enabled an objective graphtheoretic analysis of human connectomes. ... 
Geometry and temperature dependent thermal conductivity of diamond nanowires: A nonequilibrium molecular dynamics study
(20101231)Using nonequilibrium molecular dynamics methods, the analysis of geometry and temperature dependent thermal conductivities of diamond nanowires is carried out. It is found that at the same temperature conditions, thermal ... 
Geometry shapes propagation: Assessing the presence and absence of cortical symmetries through a computational model of cortical spreading depression
(20151231)Cortical spreading depression (CSD), a depolarization wave which originates in the visual cortex and travels toward the frontal lobe, has been suggested to be one neural correlate of aura migraine. To the date, little is ... 
Glioma invasion and its interplay with the nervous tissue: a multiscale model
(2019)A multiscale mathematical model for glioma cell migration and proliferation is proposed, taking into account a possible therapeutic approach. Starting with the description of processes taking place on the subcellular level, ... 
Global asymptotic stability beyond 3/2 type stability for a logistic equation with piecewise constant arguments
(20101231)In this paper, a logistic equation with multiple piecewise constant arguments is investigated in detail. We generalize the approach in two papers, [K. Uesugi, Y. Muroya, E. Ishiwata, On the global attractivity for a logistic ... 
Global dynamics of a cell mediated immunity in viral infection models with distributed delays
(20111231)In this paper, we investigate global dynamics for a system of delay differential equations which describes a virusimmune interaction in vivo. The model has two distributed time delays describing time needed for infection ... 
Global dynamics of a delayed SIRS epidemic model with a wide class of nonlinear incidence rates
(20121231)In this paper, by constructing Lyapunov functionals, we consider the global dynamics of an SIRS epidemic model with a wide class of nonlinear incidence rates and distributed delays ∫ h 0 p(τ)f(S(t),I(t τ))dτ under the ... 
Global dynamics of a viral infection model with a latent period and BeddingtonDeAngelis response
(20111231)In this paper, we study the global dynamics of a viral infection model with a latent period. The model has a nonlinear function which denotes the incidence rate of the virus infection in vivo. The basic reproduction number ...